Organic reaction mechanisms

A secondary alkyl bromide sits in a flask with a nucleophile. Does the nucleophile attack the carbon head-on from the back, flipping it inside out in one smooth step, or does the leaving group walk off first, leaving behind a flat carbocation that gets attacked from either face? The answer decides whether the product is a single, inverted stereoisomer or a racemic mixture — and it is not guesswork. Substrate shape, nucleophile strength, solvent, and temperature all tilt the balance in a predictable way, and the same variables decide whether substitution or elimination wins outright. CY11001 asks you to go beyond naming SN1S_N1, SN2S_N2, E1E1, and E2E2: derive their rate laws, justify the stereochemistry from the geometry of the transition state or intermediate, and predict the winning pathway for a given substrate–nucleophile–solvent–temperature combination.

The core insight

Whether a haloalkane reacts by concerted backside attack (SN2S_N2, inversion), stepwise ionisation (SN1S_N1, racemisation), concerted anti-periplanar elimination (E2E2), or a carbocation-mediated elimination (E1E1) is fixed by substrate class, nucleophile/base strength and bulk, leaving-group ability, and solvent — and the same factors set whether substitution or elimination dominates.

The core idea

SN2S_N2 — concerted, one transition state. The nucleophile attacks directly opposite the leaving group; as the new bond forms the old one breaks, passing through a pentacoordinate transition state that forces inversion of configuration (Walden inversion) at the reacting carbon. Because both substrate and nucleophile appear in the rate-determining (only) step, the kinetics are second order:

Rate=k2[RX][Nu−]\text{Rate} = k_{2}[\text{RX}][\text{Nu}^-]

where: k2k_2 is the second-order rate constant (units M−1s−1\text{M}^{-1}\text{s}^{-1}), [RX][\text{RX}] is substrate concentration, and [Nu−][\text{Nu}^-] is nucleophile concentration. Unhindered carbons (methyl greater than primary greater than secondary; tertiary is essentially blocked), strong/small nucleophiles, and polar aprotic solvents (no hydrogen-bond cage around the nucleophile) all push toward SN2S_N2.

SN1S_N1 — stepwise, through a planar cation. The C–LG bond breaks first, in the slow, rate-determining step, to give a planar sp2sp^2 carbocation; the nucleophile then captures it fast, from either face. Only the substrate appears in the rate law:

Rate=k1[RX]\text{Rate} = k_{1}[\text{RX}]

where: k1k_1 is the first-order rate constant (s−1\text{s}^{-1}). Attack on the flat cation from either lobe gives racemisation, with a small net-inversion bias because the departing leaving group briefly shields one face. Tertiary, benzylic, or allylic substrates (stable cations), weak nucleophiles, and polar protic solvents (which solvate and stabilise the ions) favour SN1S_N1.

E2E2 and E1E1 — the elimination partners. E2E2 is concerted: a base removes a β\beta-hydrogen while the leaving group departs the adjacent carbon in the same step, so the C–H and C–LG bonds must be anti-periplanar (180° dihedral) for the emerging pp-orbitals to line up into the new π\pi bond; Rate=k[RX][base]\text{Rate}=k[\text{RX}][\text{base}]. E1E1 shares SN1S_N1's carbocation: after ionisation, a base removes any accessible β\beta-H, so free rotation destroys the anti-periplanar requirement and stereospecificity is lost. E1cbE1cb is a third route for a poor leaving group with an acidic β\beta-H: deprotonation first gives a carbanion, which then ejects the leaving group.

Selectivity and competition. Small bases give the more substituted, more stable Zaitsev alkene; bulky bases (e.g. potassium tert-butoxide) cannot reach a crowded β\beta-H and are forced to the less hindered Hofmann alkene. Substitution and elimination compete on the same substrate: primary substrates favour SN2S_N2 unless the base is bulky or hot; secondary substrates are genuinely mixed; tertiary substrates cannot do SN2S_N2/E2E2 at all, only SN1S_N1/E1E1 (or E2E2 with a strong small base). Elimination is entropically favoured (two product molecules from one) and grows with temperature.

Figure
Four reaction-coordinate style panels comparing SN2 SN1 E2 and E1 showing one smooth hump for the concerted paths and two humps with a carbocation dip for the stepwise paths
Concerted (one step) versus stepwise (via a carbocation) SN2 (and E2): one hump TS second order: rate = k[RX][Nu] SN1 (and E1): two humps, cation dip carbocation first order: rate = k[RX] only
Derivation AGetting a clean SN2 rate constant by flooding

The goal is to show how a second-order rate law of the form rate equals k times substrate concentration times nucleophile concentration, which cannot be tested directly by a simple half-life measurement because both concentrations change together as the reaction runs, is converted in practice into an easily measurable first-order decay by deliberately flooding the reaction with a large excess of nucleophile so that its concentration barely moves.

Step 1. Start from the true rate law, Rate=k2[RX][Nu−]\text{Rate}=k_2[\text{RX}][\text{Nu}^-]. If both concentrations fall together during the run, the time dependence is awkward to extract k2k_2 from directly.

Step 2. Flood the system: use the nucleophile in large excess, [Nu−]0≫[RX]0[\text{Nu}^-]_0 \gg [\text{RX}]_0 (for example, ten- to hundredfold). Then over the course of the reaction [Nu−][\text{Nu}^-] stays essentially at its initial value [Nu−]0[\text{Nu}^-]_0, so the rate law collapses to Rate=kobs[RX]\text{Rate}=k_{\text{obs}}[\text{RX}], an effective first-order process with kobs=k2[Nu−]0k_{\text{obs}}=k_2[\text{Nu}^-]_0.

Step 3. A first-order decay has the familiar integrated form ln⁡ ⁣([RX]0[RX])=kobst\ln\!\left(\dfrac{[\text{RX}]_0}{[\text{RX}]}\right)=k_{\text{obs}}t, so a plot of ln⁡[RX]\ln[\text{RX}] against tt is a straight line of slope −kobs-k_{\text{obs}}, and the half-life gives kobs=ln⁡2t1/2k_{\text{obs}}=\dfrac{\ln 2}{t_{1/2}} directly — no need to know [RX][\text{RX}] in absolute units at all.

Step 4. Recover the true second-order constant by dividing out the flooded concentration: k2=kobs[Nu−]0k_2=\dfrac{k_{\text{obs}}}{[\text{Nu}^-]_0}. Plug in numbers: if the flooded run with [NaOEt]0=0.50 M[\text{NaOEt}]_0=0.50\ \text{M} shows a half-life of t1/2=200 st_{1/2}=200\ \text{s}, then kobs=0.693200=3.47×10−3 s−1k_{\text{obs}}=\dfrac{0.693}{200}=3.47\times10^{-3}\ \text{s}^{-1}, and k2=3.47×10−30.50=6.9×10−3 M−1s−1k_2=\dfrac{3.47\times10^{-3}}{0.50}=6.9\times10^{-3}\ \text{M}^{-1}\text{s}^{-1}.

Worked example

Predict the mechanism and stereochemical outcome for the reaction of (R)-2-bromobutane with sodium ethoxide (NaOEt\text{NaOEt}, 0.50 M) in ethanol, and estimate how the initial rate would respond if the ethoxide concentration were doubled.

Step 1. Classify the substrate: 2-bromobutane is a secondary alkyl bromide, so both SN2S_N2/E2E2 and SN1S_N1/E1E1 pathways are geometrically possible — the decision comes down to the nucleophile/base and solvent.

Step 2. Classify the reagent: ethoxide is a strong, only moderately bulky base and a good nucleophile. With a secondary substrate and a strong small base in a protic solvent, elimination is favoured as the major pathway, but SN2S_N2 remains a real competing channel.

Step 3. Elimination channel (E2E2): ethoxide removes a β\beta-hydrogen anti-periplanar to the C–Br bond while the C–Br bond breaks in the same step, forming the new π\pi bond directly. Elimination toward C-1 gives 1-butene (Hofmann); elimination toward C-3 gives 2-butene. Because ethoxide is only moderately bulky, the more substituted alkene — (E)-2-butene, the Zaitsev product — dominates, with the E isomer favoured over Z since its anti-periplanar transition state is lower in energy.

Step 4. Substitution channel (SN2S_N2): backside attack by ethoxide at C-2 inverts the stereocentre, turning the (R) substrate into (S)-2-ethoxybutane.

Step 5. Kinetics: since ethoxide participates in the rate-determining step of both the E2E2 and SN2S_N2 channels, Rate=k[RX][EtO−]\text{Rate}=k[\text{RX}][\text{EtO}^-] for each. Using the flooding-derived form from the derivation above, doubling [EtO−][\text{EtO}^-] from 0.50 M0.50\ \text{M} to 1.00 M1.00\ \text{M} doubles kobs=k2[EtO−]k_{\text{obs}}=k_2[\text{EtO}^-], and therefore doubles the initial rate of both product-forming channels — the product ratio (Zaitsev-2-butene versus (S)-2-ethoxybutane) is unchanged, because both rates scale by the same factor. The major product is (E)-2-butene from E2E2, with (S)-2-ethoxybutane from competing SN2S_N2, and the total rate doubles on doubling ethoxide concentration while the product ratio stays fixed.

Common traps

  • Assuming SN1S_N1 gives exactly 50:50 racemisation — real systems often show slight net inversion because the departing leaving group briefly shields one face of the carbocation.
  • Drawing an eclipsed or syn transition state for E2E2 — only the anti-periplanar (180°) arrangement gives correct pp-orbital overlap for the forming π\pi bond.
  • Confusing nucleophilicity with basicity — the same species can be a strong base but a weak nucleophile (or vice versa), and this, not "strength" alone, decides substitution versus elimination.
  • Forgetting that doubling a reagent's concentration only doubles the rate, not necessarily the product ratio, when that reagent enters the rate-determining step of two competing pathways equally.

Ask the tutor: if you want to work through the full free-energy diagram for a specific substrate/nucleophile pair, or see why a bulky base flips Zaitsev to Hofmann selectivity, ask the AI tutor to build it with you step by step.

Why does the same substrate sometimes give substitution and sometimes elimination with the same nucleophile?

Because substitution and elimination are always competing at some level, and which one dominates depends on how strong a base (versus nucleophile) the reagent is, how bulky it is, and the temperature. A small, strong base like ethoxide on a secondary substrate favours elimination; a weaker, more polarisable nucleophile like iodide favours substitution. Raising the temperature always shifts the balance toward elimination, since it forms two separate molecules and is entropically favoured.

If SN1 goes through a flat carbocation, why is the product not perfectly 50 percent each enantiomer?

In principle a fully free, planar carbocation should be attacked equally from both faces, giving exact racemisation. In practice the leaving group does not always diffuse away instantly — it can linger as a loose ion pair on one face for a moment, partially blocking nucleophile approach from that side. This produces a small statistical preference for attack from the opposite face, so the product shows slight net inversion rather than perfect 50:50 racemisation.

How do I quickly decide which mechanism a given reagent combination will follow?

Check the substrate first: primary essentially rules out SN1/E1 (unstable cation, easy backside access), tertiary rules out SN2/E2 (too hindered for backside attack), secondary is genuinely competitive. Then check the reagent: strong, small, and basic pushes toward E2 over SN2; weak and polarisable pushes toward SN1/SN2 over elimination. Finally check the solvent (protic favours the ionic SN1/E1 pathways) and temperature (heat favours elimination). Running through substrate, then reagent, then solvent, then temperature in that order settles almost every case.

Before this

Where this leads