Organic reaction mechanisms
A secondary alkyl bromide sits in a flask with a nucleophile. Does the nucleophile attack the carbon head-on from the back, flipping it inside out in one smooth step, or does the leaving group walk off first, leaving behind a flat carbocation that gets attacked from either face? The answer decides whether the product is a single, inverted stereoisomer or a racemic mixture — and it is not guesswork. Substrate shape, nucleophile strength, solvent, and temperature all tilt the balance in a predictable way, and the same variables decide whether substitution or elimination wins outright. CY11001 asks you to go beyond naming , , , and : derive their rate laws, justify the stereochemistry from the geometry of the transition state or intermediate, and predict the winning pathway for a given substrate–nucleophile–solvent–temperature combination.
Whether a haloalkane reacts by concerted backside attack (, inversion), stepwise ionisation (, racemisation), concerted anti-periplanar elimination (), or a carbocation-mediated elimination () is fixed by substrate class, nucleophile/base strength and bulk, leaving-group ability, and solvent — and the same factors set whether substitution or elimination dominates.
The core idea
— concerted, one transition state. The nucleophile attacks directly opposite the leaving group; as the new bond forms the old one breaks, passing through a pentacoordinate transition state that forces inversion of configuration (Walden inversion) at the reacting carbon. Because both substrate and nucleophile appear in the rate-determining (only) step, the kinetics are second order:
where: is the second-order rate constant (units ), is substrate concentration, and is nucleophile concentration. Unhindered carbons (methyl greater than primary greater than secondary; tertiary is essentially blocked), strong/small nucleophiles, and polar aprotic solvents (no hydrogen-bond cage around the nucleophile) all push toward .
— stepwise, through a planar cation. The C–LG bond breaks first, in the slow, rate-determining step, to give a planar carbocation; the nucleophile then captures it fast, from either face. Only the substrate appears in the rate law:
where: is the first-order rate constant (). Attack on the flat cation from either lobe gives racemisation, with a small net-inversion bias because the departing leaving group briefly shields one face. Tertiary, benzylic, or allylic substrates (stable cations), weak nucleophiles, and polar protic solvents (which solvate and stabilise the ions) favour .
and — the elimination partners. is concerted: a base removes a -hydrogen while the leaving group departs the adjacent carbon in the same step, so the C–H and C–LG bonds must be anti-periplanar (180° dihedral) for the emerging -orbitals to line up into the new bond; . shares 's carbocation: after ionisation, a base removes any accessible -H, so free rotation destroys the anti-periplanar requirement and stereospecificity is lost. is a third route for a poor leaving group with an acidic -H: deprotonation first gives a carbanion, which then ejects the leaving group.
Selectivity and competition. Small bases give the more substituted, more stable Zaitsev alkene; bulky bases (e.g. potassium tert-butoxide) cannot reach a crowded -H and are forced to the less hindered Hofmann alkene. Substitution and elimination compete on the same substrate: primary substrates favour unless the base is bulky or hot; secondary substrates are genuinely mixed; tertiary substrates cannot do / at all, only / (or with a strong small base). Elimination is entropically favoured (two product molecules from one) and grows with temperature.
The goal is to show how a second-order rate law of the form rate equals k times substrate concentration times nucleophile concentration, which cannot be tested directly by a simple half-life measurement because both concentrations change together as the reaction runs, is converted in practice into an easily measurable first-order decay by deliberately flooding the reaction with a large excess of nucleophile so that its concentration barely moves.
Step 1. Start from the true rate law, . If both concentrations fall together during the run, the time dependence is awkward to extract from directly.
Step 2. Flood the system: use the nucleophile in large excess, (for example, ten- to hundredfold). Then over the course of the reaction stays essentially at its initial value , so the rate law collapses to , an effective first-order process with .
Step 3. A first-order decay has the familiar integrated form , so a plot of against is a straight line of slope , and the half-life gives directly — no need to know in absolute units at all.
Step 4. Recover the true second-order constant by dividing out the flooded concentration: . Plug in numbers: if the flooded run with shows a half-life of , then , and .
Worked example
Predict the mechanism and stereochemical outcome for the reaction of (R)-2-bromobutane with sodium ethoxide (, 0.50 M) in ethanol, and estimate how the initial rate would respond if the ethoxide concentration were doubled.
Step 1. Classify the substrate: 2-bromobutane is a secondary alkyl bromide, so both / and / pathways are geometrically possible — the decision comes down to the nucleophile/base and solvent.
Step 2. Classify the reagent: ethoxide is a strong, only moderately bulky base and a good nucleophile. With a secondary substrate and a strong small base in a protic solvent, elimination is favoured as the major pathway, but remains a real competing channel.
Step 3. Elimination channel (): ethoxide removes a -hydrogen anti-periplanar to the C–Br bond while the C–Br bond breaks in the same step, forming the new bond directly. Elimination toward C-1 gives 1-butene (Hofmann); elimination toward C-3 gives 2-butene. Because ethoxide is only moderately bulky, the more substituted alkene — (E)-2-butene, the Zaitsev product — dominates, with the E isomer favoured over Z since its anti-periplanar transition state is lower in energy.
Step 4. Substitution channel (): backside attack by ethoxide at C-2 inverts the stereocentre, turning the (R) substrate into (S)-2-ethoxybutane.
Step 5. Kinetics: since ethoxide participates in the rate-determining step of both the and channels, for each. Using the flooding-derived form from the derivation above, doubling from to doubles , and therefore doubles the initial rate of both product-forming channels — the product ratio (Zaitsev-2-butene versus (S)-2-ethoxybutane) is unchanged, because both rates scale by the same factor. The major product is (E)-2-butene from , with (S)-2-ethoxybutane from competing , and the total rate doubles on doubling ethoxide concentration while the product ratio stays fixed.
Common traps
- Assuming gives exactly 50:50 racemisation — real systems often show slight net inversion because the departing leaving group briefly shields one face of the carbocation.
- Drawing an eclipsed or syn transition state for — only the anti-periplanar (180°) arrangement gives correct -orbital overlap for the forming bond.
- Confusing nucleophilicity with basicity — the same species can be a strong base but a weak nucleophile (or vice versa), and this, not "strength" alone, decides substitution versus elimination.
- Forgetting that doubling a reagent's concentration only doubles the rate, not necessarily the product ratio, when that reagent enters the rate-determining step of two competing pathways equally.
Ask the tutor: if you want to work through the full free-energy diagram for a specific substrate/nucleophile pair, or see why a bulky base flips Zaitsev to Hofmann selectivity, ask the AI tutor to build it with you step by step.
Why does the same substrate sometimes give substitution and sometimes elimination with the same nucleophile?
Because substitution and elimination are always competing at some level, and which one dominates depends on how strong a base (versus nucleophile) the reagent is, how bulky it is, and the temperature. A small, strong base like ethoxide on a secondary substrate favours elimination; a weaker, more polarisable nucleophile like iodide favours substitution. Raising the temperature always shifts the balance toward elimination, since it forms two separate molecules and is entropically favoured.
If SN1 goes through a flat carbocation, why is the product not perfectly 50 percent each enantiomer?
In principle a fully free, planar carbocation should be attacked equally from both faces, giving exact racemisation. In practice the leaving group does not always diffuse away instantly — it can linger as a loose ion pair on one face for a moment, partially blocking nucleophile approach from that side. This produces a small statistical preference for attack from the opposite face, so the product shows slight net inversion rather than perfect 50:50 racemisation.
How do I quickly decide which mechanism a given reagent combination will follow?
Check the substrate first: primary essentially rules out SN1/E1 (unstable cation, easy backside access), tertiary rules out SN2/E2 (too hindered for backside attack), secondary is genuinely competitive. Then check the reagent: strong, small, and basic pushes toward E2 over SN2; weak and polarisable pushes toward SN1/SN2 over elimination. Finally check the solvent (protic favours the ionic SN1/E1 pathways) and temperature (heat favours elimination). Running through substrate, then reagent, then solvent, then temperature in that order settles almost every case.